tenOever LaboratoryVirology · Host defense · RNA biology
Technologies

Multiplexed cytokine measurement

immunology assays

Recorded terms: cytokine multiplex assay; ELISA cytokine profiling; Luminex cytokine panel; multiplex bead cytokine array; multiplexed ELISA

2021 · Nature Biomedical Engineering · collaborative

A human-airway-on-a-chip for the rapid identification of candidate antiviral therapeutics and prophylactics

A microfluidic bronchial airway chip lined with differentiated human airway epithelium and pulmonary endothelium reproduces strain-dependent influenza virulence, cytokine output and neutrophil recruitment, and when drugs are delivered at clinically achievable blood concentrations under flow it separates candidates that work in cell lines from those that also work in hamsters challenged with SARS-CoV-2.

2021 · Journal of Virology · lab-led

The NF-κB Transcriptional Footprint Is Essential for SARS-CoV-2 Replication

SARS-CoV-2 infection of human lung epithelial cells engages NF-κB at chromatin, transcriptional, protein and post-translational levels without engaging the type I interferon transcription factors, and loss of p65 or p50 abolishes viral replication in a manner rescued by reconstituting RelA transcriptional activity.

2020 · Cell · lab-led

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19

Across cell lines, primary bronchial epithelium, ferrets and patient material, SARS-CoV-2 infection produces a transcriptional response distinguishable from that to other respiratory viruses, combining low type I and type III interferon induction with a moderate interferon-stimulated gene response and strong chemokine and IL-6 expression.

2020 · Cell · collaborative

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

A time-resolved phosphoproteomic survey of SARS-CoV-2-infected cells showing that infection acts mainly through signalling rather than protein abundance, activating casein kinase II and the p38 cascade while shutting down mitotic kinases, and converting that kinase profile into inhibitors with antiviral activity.

2015 · Cell Host & Microbe · lab-led

microRNA Function Is Limited to Cytokine Control in the Acute Response to Virus Infection

Rapid vector-delivered destruction of the entire cellular microRNA population shows that post-transcriptional silencing makes no measurable contribution to the acute transcriptional response to double-stranded RNA or to type I interferon, while sustained loss of microRNAs derepresses a broad set of chemokines and proinflammatory cytokines in fibroblasts and in mouse lung.

2014 · Journal of Experimental Medicine · co-led

Long-term survival of influenza virus infected club cells drives immunopathology

A Cre recombinase-expressing influenza A virus combined with Cre-responsive reporter and ablation mouse strains showed that a subpopulation of directly infected lung cells, predominantly club cells, survives productive infection, sustains elevated interferon-stimulated gene and chemokine expression, and contributes to bronchiolar epithelial damage after virus is cleared.